96503-8 Adenovirus DNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP14061-3   Adenovirus
Adenoviruses, medium-sized (90-100 nm), non-enveloped icosohedral viruses with double-stranded DNA, have over 50 immunologically distinct types that cause infections in humans. Adenoviruses usually cause respiratory illness with symptoms ranging from the common cold to pneumonia, croup, and bronchitis. Adenoviruses can cause other illnesses such as gastroenteritis, conjunctivitis, cystitis, and less commonly, neurological disease. Infants and individuals with weakened immune systems are at high risk for severe complications of adenovirus infection and adenoviruses commonly cause acute respiratory illness in military recruits. Some asymptomatic people infected with adenoviruses have ongoing infections in their tonsils, adenoids, and intestines and can shed the virus for months or years. The virus can persist outside the body for long periods. Adenovirus infections can be detected using antigen detection, polymerase chain reaction assay, virus isolation, and serology. Typing is usually done by hemagglutination-inhibition and/or neutralization with type-specific antisera or by molecular methods. As of October 2014 there is no adenovirus vaccine for the general public, however an oral vaccine against types 4 and 7 was approved by the U.S. Food and Drug Administration in March 2011 for U.S. military personnel. The vaccine is recommended by the U.S. Department of Defense for military recruits entering basic training in order to prevent acute respiratory disease. Most adenovirus infections are mild and typically require only treatment of symptoms. Source: Centers for Disease Control and Prevention, CDC: Adenovirus

Fully-Specified Name

Component

Adenovirus DNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HAdV DNA Resp Ql NAA+probe

Display Name

Adenovirus DNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Adenovirus, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.69

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Adeno virus
• Amplif
• Amplification
• Amplified
• Breathing
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• HAdV
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

94040-3 Adenovirus A+B+C+D+E DNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP412157-2   Adenovirus A+B+C+D+E
Adenoviruses, medium-sized (90-100 nm), non-enveloped icosohedral viruses with double-stranded DNA, have over 50 immunologically distinct types that cause infections in humans. Adenoviruses usually cause respiratory illness with symptoms ranging from the common cold to pneumonia, croup, and bronchitis. Adenoviruses can cause other illnesses such as gastroenteritis, conjunctivitis, cystitis, and less commonly, neurological disease. Infants and individuals with weakened immune systems are at high risk for severe complications of adenovirus infection and adenoviruses commonly cause acute respiratory illness in military recruits. Some asymptomatic people infected with adenoviruses have ongoing infections in their tonsils, adenoids, and intestines and can shed the virus for months or years. The virus can persist outside the body for long periods. Adenovirus infections can be detected using antigen detection, polymerase chain reaction assay, virus isolation, and serology. Typing is usually done by hemagglutination-inhibition and/or neutralization with type-specific antisera or by molecular methods. As of October 2014 there is no adenovirus vaccine for the general public, however an oral vaccine against types 4 and 7 was approved by the U.S. Food and Drug Administration in March 2011 for U.S. military personnel. The vaccine is recommended by the U.S. Department of Defense for military recruits entering basic training in order to prevent acute respiratory disease. Most adenovirus infections are mild and typically require only treatment of symptoms.[CDC: Adenovirus] There are seven subgroups or species of adenovirus labeled A through G. The subgroups of adenovirus infect certain areas of the body. Subgroups A and F are usually found in the gastrointestinal tract. Subgroups B, C and E tend to infect the respiratory tract. Subgroup D is the cause of epidemic kerato-conjunctivitis.[http://journals.lww.com/pidj/Documents/Adenovirus%20ESPID%20June%2012.pdf]Subgroup G causes gastroenteritis. The DNA homology between the subgroups is less than 20%. PMID: 24678403 Source: Regenstrief LOINC

Fully-Specified Name

Component

Adenovirus A+B+C+D+E DNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HAdV A+B+C+D+E DNA Resp Ql NAA+probe

Display Name

Adenovirus A+B+C+D+E DNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Adenovirus A+B+C+D+E, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.67

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• A,B
• Adeno virus
• Amplif
• Amplification
• Amplified
• Breathing
• Deoxyribonucleic acid
• Dextro
• DNA NUCLEIC ACID PROBE
• DNA probe
• HAdV
• HAdV A+B+C+D+E
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92136-1 Adenovirus B+C+E DNA [Presence] in Respiratory system specimen by NAA with probe detection

Fully-Specified Name

Component

Adenovirus B+C+E DNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

AdV B+C+E DNA Resp Ql NAA+probe

Display Name

Adenovirus B+C+E DNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Adenovirus B+C+E, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Adeno virus
• AdV B+C+E
• Amplif
• Amplification
• Amplified
• Breathing
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• HAdV
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92132-0 Enterovirus A+B+C RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP310277-1   Enterovirus A+B+C
Enteroviruses are small, non-enveloped, single stranded RNA viruses in the picornavirus family and include coxsackievirus, rhinovirus, echovirus, and poliovirus species. They are the most common viral pathogen worldwide, and clinical manifestations range from mild, cold-like symptoms to severe infections, including encephalitis, aseptic (viral) meningitis, and myocarditis. Enterovirus infection has also been associated with the onset of type I diabetes mellitus. PMID: 23764548 Source: Regenstrief LOINC, PMID: 23764548

Fully-Specified Name

Component

Enterovirus A+B+C RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

EV-A+B+C RNA Resp Ql NAA+probe

Display Name

Enterovirus A+B+C RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Enterovirus A+B+C, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• A,B
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• Entero virus
• EV
• EV-A+B+C
• EV-A+B+C RNA
• EV-PCR
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92135-3 Human bocavirus 1+2+3 DNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP310276-3   Human bocavirus 1+2+3
Human bocavirus (HBoV) is a parvovirus that was first identified in 2005 and has been found in a variety of specimen types, including respiratory, stool, blood, and urine. It primarily causes respiratory symptoms in young children under the age of two. HBoV, like other paroviruses, is a small, icosahedral, non-enveloped DNA virus. Four subtypes of HBoV have been identified (HBoV 1-4), with subtypes 1-2 being the most common cause of illness. Subtype 1 is most often found in respiratory specimens, and types 2-4 in stool specimens. Transmission and infection typically occur in the winter and spring. PMID: 27818586 Source: Regenstrief LOINC

Fully-Specified Name

Component

Human bocavirus 1+2+3 DNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HBoV 1+2+3 DNA Resp Ql NAA+probe

Display Name

Human bocavirus 1+2+3 DNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Human bocavirus 1+2+3, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• Deoxyribonucleic acid
• DNA NUCLEIC ACID PROBE
• DNA probe
• HBoV
• HBoV 1+2+3
• HBoV 1+2+3 DNA
• i
• II
• III
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92146-0 Human coronavirus 229E+NL63 RNA [Presence] in Respiratory system specimen by NAA with probe detection

Fully-Specified Name

Component

Human coronavirus 229E+NL63 RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HCoV 229E+NL63 RNA Resp Ql NAA+probe

Display Name

HCoV 229E+NL63 RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Human coronavirus 229E+NL63, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV 229E
• HCoV 229E+NL63
• HCoV 229E+NL63 RNA
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92147-8 Human coronavirus HKU1+OC43 RNA [Presence] in Respiratory system specimen by NAA with probe detection

Fully-Specified Name

Component

Human coronavirus HKU1+OC43 RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HCoV HKU1+OC43 RNA Resp Ql NAA+probe

Display Name

HCoV HKU1+OC43 RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Human coronavirus HKU1+OC43, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV
• HCoV HKU1
• HCoV HKU1+OC43
• HCoV HKU1+OC43 RNA
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92134-6 Human metapneumovirus RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP34982-6   Human metapneumovirus
Human metapneumovirus (hMPV) is a Paramyxoviridae family virus that causes upper and lower respiratory tract infections in the very young, elderly and those with compromised immune systems. hMPV can vary in its size, shape and staining properties, and shares similar structure with avian pneumovirus (aMPV) and human respiratory syncytial virus (hRSV). Typically, molecular testing methods, like reverse transcriptase PCR (RT-PCR), are used to detect hMPV. hMPV is thought to be responsible for about 5% to 10% of pediatric hospitalizations of those suffering from acute respiratory tract infection. PMID: 24841931 Source: Regenstrief LOINC

Fully-Specified Name

Component

Human metapneumovirus RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

hMPV RNA Resp Ql NAA+probe

Display Name

hMPV RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Human metapneumovirus, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• hMPV
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

81428-5 Influenza virus A H7 Eurasia RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP208510-0   Influenza virus A H7 Eurasia
Human infections with a new avian influenza A (H7N9) virus were first reported in China in March 2013. Most of these infections are believed to result from exposure to infected poultry or contaminated environments, as H7N9 viruses have also been found in poultry in China. While some mild illnesses in human H7N9 cases have been seen, most patients have had severe respiratory illness, with about one-third resulting in death. Rare, limited person-to-person spread of this virus has been identified in China, but there is no evidence of sustained person-to-person spread of H7N9. The first case outside of China was in Malaysia and was reported on February 12, 2014. The case was detected in a traveler from an H7N9-affected area of China. The new H7N9 virus has not been detected in people or birds in the United States as of this writing. Source: Centers for Disease Control and Prevention, CDC: Avian Influenza A (H7N9) Virus

Fully-Specified Name

Component

Influenza virus A H7 Eurasia RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV H7 Euras RNA Resp Ql NAA+probe

Display Name

FLUAV H7 Euras RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Influenza A H7 Eurasia, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.56

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL744-4

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUAV H7
• FLUAV H7 Euras
• FLUAV H7 Eurasia RNA
• FLUV
• Fowl plague
• ID
• Infectious Disease
• InfectiousDisease
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lung
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• PH
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• Public Health
• PublicHealth
• Pulmonary
• Pulmonology
• QBR
• QL
• Qual
• Qualitative
• Random
• Respiratory
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

92142-9 Influenza virus A RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP14239-5   Influenza virus A
Influenza viruses, from the family Orthomyxoviridae, are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C are medically relevant to humans. Aquatic birds harboring avian IAV are the likely natural reservoir for all known IAV subtypes and are probably the original source of all human pandemic IAV strains. IAV maintained in wild birds have been associated with stable host switch events to novel hosts, including most often to domestic poultry but also to horses, swine, toothed whales and humans. The influenza virus life cycle begins with the binding of viral HA to host cell receptors. Endocytosis and HA-mediated fusion of the viral and cellular membranes occurs. Viral ribonucleoprotein complexes are released into the cytoplasm, travel to the nucleus, then are replicated and transcribed by the viral polymerase complex. The new viruses are formed and bud when the newly formed ribonucleicprotein complexes and structural proteins reach the plasma membrane. Further research is needed to better understand how IAVs switch hosts and the viral genetic changes that underlie human adaptation. IAV causes respiratory infections in humans ranging from asymptomatic to fatal. Pandemics are attributed to "novel" viruses which possess a viral hemagglutinin (HA) to which humans do not have immunity. PMID: 20542248 ] PMID: 25812763
Influenza viruses A and B are single-stranded RNA enveloped viruses belonging to the Orthomyxoviridae family. The symptoms of infection of Influenza A and B include fever, cough, sore throat, rhinorrhea, nasal congestion, headache, myalgia and malaise. Some patients may experience gastrointestinal symptoms including watery diarrhea, vomiting and abdominal pain. The influenza viruses spread rapidly in enclosed spaces with a documented rate of infection of 70% following a common source of exposure. Infection occurs in the respiratory epithelium in both the upper and lower respiratory tract, and the virus can be found in many specimen types, including nasal aspirates, nasal or nasopharyngeal swabs, throat swabs, sputum and tracheal aspirates. When infection rates reach epidemic proportions, hospitalization of children and elderly patients rises as does the mortality rates of elderly patients.(Manual of Clinical Microbiology, 11th edition, James H. Jorgensen; Karen C. Carroll; Guido Funke; Michael A Pfaller; Marie Louise Landry; Sandra S. Richter; David W. Warnock) Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus A RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUAV RNA Resp Ql NAA+probe

Display Name

FLUAV RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Influenza A (Flu A), Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Avian influenza
• Bird flu
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUA
• FLUAV
• FLUV
• Fowl plague
• Influ
• Influenza A
• Influenza A virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92141-1 Influenza virus B RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP14240-3   Influenza virus B
Influenza virus from the family Orthomyxoviridae are enveloped negative-strand RNA viruses with segmented genomes containing seven to eight gene segments. Of the five genera in the family, only influenza A virus (IAV), influenza B and C viruses are medically relevant to humans. Influenza A and B viruses have a similar structure whereby these viruses each contain eight discrete single-stranded RNA gene segments, each encoding at least one protein. While having a close phylogenetic relationship, influenza virus types A and B manifest very differently. While IAV infects birds, humans and other mammals, influenza B only infects humans and seals. Although both viruses cause human respiratory infection seasonally in temperate climate regions and more continually in the tropics, influenza B is normally less prevalent and causes less severe disease than IAV viruses. Research is ongoing to determine the evolutionary and epidemiological factors that shape the genetic diversity of influenza B virus. PMID: 25812763 [CDC:flu/about/viruses/types] Source: Regenstrief LOINC

Fully-Specified Name

Component

Influenza virus B RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

FLUBV RNA Resp Ql NAA+probe

Display Name

FLUBV RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Influenza B (Flu B), Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• FLUB
• FLUBV
• FLUV
• Influ
• Influenza B
• Influenza B virus
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

94501-4 Middle East respiratory syndrome coronavirus (MERS-CoV) RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP173753-7   Middle East respiratory syndrome coronavirus
Middle East Respiratory Syndrome (MERS) is an illness caused by the virus Middle East Respiratory Syndrome Coronovirus (MERS-CoV). The illness was first reported in Saudi Arabia in 2012, but was later found to have originated in Jordan in 2012. MERS has been found in camels leading to speculation that they may be the initial reservoir for the virus. The largest outbreak of MERS that has occurred outside of the Arabian Peninsula was in the Republic of Korea in 2015 and was linked to an individual who had been traveling in the Arabian Peninsula. The virus is probably spread through respiratory secretions from infected individuals though the exact mode of transmission is under investigation. Infection with MERS begins with an incubation period of 5-6 days followed by a severe acute illness that involves fever, shortness of breath and for patients with comorbidities or reduced immunity can lead to pneumonia and kidney failure. The mortality rate of MERS is 3-4 out of 10 people who are infected, though most of the people who die have underlying conditions. In addition, some people experience only cold-like symptoms and others have no symptoms at all. In the United States, most state laboratories are approved to test for MERS-CoV using the real-time reverse transcription-PCR assay developed by the CDC. The assay can be run on respiratory, serum and stool specimens.[CDC: coronavirus/mers] Source: Regenstrief LOINC

Fully-Specified Name

Component

Middle east respiratory syndrome coronavirus RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

MERS-CoV RNA Resp Ql NAA+probe

Display Name

MERS-CoV RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Middle East respiratory syndrome coronavirus (MERS-CoV), Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.68

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Observation

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• Camel flu
• Corona virus
• DNA NUCLEIC ACID PROBE
• DNA probe
• HCoV-EMC/2012
• ID
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lung
• Lungs
• MERS-CoV
• MERS-CoV RNA
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• Pulmonary
• Pulmonology
• QBR
• QL
• Qual
• Qualitative
• Random
• Respiratory
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92140-3 Parainfluenza virus 1 RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP14241-1   Parainfluenza virus 1
HPIV-1 causes biennial outbreaks of croup in the fall (presently in the United States during odd numbered years). HPIVs are negative-sense, single-stranded RNA viruses that possess fusion and hemagglutinin-neuraminidase glycoprotein "spikes" on their surface. HPIVs are spread from respiratory secretions through close contact with infected persons or contact with contaminated surfaces or objects. HPIVs are ubiquitous and infect most people during childhood. Source: Regenstrief Institute

Fully-Specified Name

Component

Parainfluenza virus 1 RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HPIV1 RNA Resp Ql NAA+probe

Display Name

Parainfluenza virus 1 RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Parainfluenza virus 1, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• HPIV
• HPIV1
• Human respirovirus 1
• i
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• Para
• Parainflu
• Parainfluenza type 1
• Parainfluenza type I
• PCR
• PI1
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92139-5 Parainfluenza virus 2 RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP14242-9   Parainfluenza virus 2
Human parainfluenza viruses (HPIVs) are a group of four distinct serotypes of single-stranded RNA viruses belonging to the paramyxovirus family. They are the second most common cause of lower respiratory tract infection in younger children. Repeated infection throughout the life of the host is not uncommon. Symptoms of later breakouts include upper respiratory tract illness as in a cold and sore throat. The incubation period of all four serotypes is 1 to 7 days. Parainfluenza viruses can be detected via cell culture, immunofluorescent microscopy, and PCR. Though no vaccines currently exist, research into vaccines for HPIV-1, -2, and -3 is underway. Parainfluenza viruses last only a few hours in the environment and are inactivated by soap and water. Copyright Text is available under the Creative Commons Attribution/Share-Alike License. See http://creativecommons.org/licenses/by-sa/3.0/ for details. Source: Wikipedia, Parainfluenza virus 2 (Wikipedia)

Fully-Specified Name

Component

Parainfluenza virus 2 RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HPIV2 RNA Resp Ql NAA+probe

Display Name

Parainfluenza virus 2 RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Parainfluenza virus 2, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• HPIV
• HPIV2
• Human rubulavirus 2
• II
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• Para
• Parainflu
• Parainfluenza type 2
• Parainfluenza type II
• PCR
• PI2
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92138-7 Parainfluenza virus 3 RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP14243-7   Parainfluenza virus 3
HPIV-3 peak activity occurs during the spring and early summer months each year, but the virus can be isolated througout the year. HPIVs are negative-sense, single-stranded RNA viruses that possess fusion and hemagglutinin-neuraminidase glycoprotein "spikes" on their surface. HPIVs are spread from respiratory secretions through close contact with infected persons or contact with contaminated surfaces or objects. HPIVs are ubiquitous and infect most people during childhood. Source: Regenstrief Institute

Fully-Specified Name

Component

Parainfluenza virus 3 RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HPIV3 RNA Resp Ql NAA+probe

Display Name

Parainfluenza virus 3 RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Parainfluenza virus 3, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• HPIV
• HPIV3
• Human respirovirus 3
• III
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• Para
• Parainflu
• Parainfluenza type 3
• Parainfluenza type III
• PCR
• PI3
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92137-9 Parainfluenza virus 4 RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP35704-3   Parainfluenza virus 4
Human parainfluenza viruses (HPIVs) are common causes of respiratory tract disease in infants and young children. Each of the four HPIVs has different clinical and epidemiologic features. HPIV-4 is detected infrequently, and is less likely to cause severe disease; but it may be more common than once thought. Source: Centers for Disease Control and Prevention, CDC

LP35704-3   Parainfluenza virus 4
Human parainfluenza viruses (HPIVs) have been recognized as a cause of respiratory tract infections for many decades. They belong to the Paramyxoviridae family, subfamily Paramyxovirinae, and are classified into 4 serotypes. Serotype 4 can be further subdivided into 2 antigenic subtypes, HPIV-4A and HPIV-4B. Source: Centers for Disease Control and Prevention, CDC

Fully-Specified Name

Component

Parainfluenza virus 4 RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

HPIV4 RNA Resp Ql NAA+probe

Display Name

Parainfluenza virus 4 RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Parainfluenza virus 4, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• HPIV
• HPIV4
• Human rubulavirus 4
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• Para
• Parainflu
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92131-2 Respiratory syncytial virus RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP14244-5   Respiratory syncytial virus
Human respiratory syncytial virus (RSV), a negative-sense, single-stranded RNA virus of the family Paramyxoviridae, causes upper respiratory tract infections and bronchiolitis, an infection of the small airways that can cause wheezing and respiratory distress. Infants, especially those that were born prematurely, are particularly susceptible, and RSV bronchiolitis is a common cause of hospitalization for infants during the winter months. Certain groups of high-risk infants may be given palivizumab, a recombinant monoclonal antibody to RSV, as prophylaxis against RSV infection. Source: Regenstrief LOINC

LP39551-4   Respiratory syncytial virus RNA
The respiratory syncytial virus (RSV) is a member of the Paramyxoviridae family and is an enveloped pleomorphic virus. RSV is spread through contact with respiratory droplets, contact with the patient and contact with contaminated surfaces. The rate of transmission is affected by outside temperature, humidity and precipitation. RSV infection spreads faster when the temperature is low and the humidity is high in temperate zones and when rainfall levels are high in tropical climates. RSV causes severe lower respiratory infections in infants and young children. Infants born prematurely are particularly susceptible. Symptoms of RSV infection include cough, low-grade fever and rhinorrhea. High risk adult populations including patients in residential facilities, those with heart and lung diseases and immunocompromised patients are susceptible to severe RSV infection and significant morbidity.(Manual of Clinical Microbiology, 11th edition, James H. Jorgensen; Karen C. Carroll; Guido Funke; Michael A Pfaller; Marie Louise Landry; Sandra S. Richter; David W. Warnock) Source: Regenstrief LOINC

Fully-Specified Name

Component

Respiratory syncytial virus RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

RSV RNA Resp Ql NAA+probe

Display Name

RSV RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Respiratory syncytial virus (RSV), Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• HRSV
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Ribonucleic acid
• RS
• RSV
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

92130-4 Rhinovirus RNA [Presence] in Respiratory system specimen by NAA with probe detection

Part Descriptions

LP17714-4   Rhinovirus
Human rhinoviruses (HRVs) can be categorized into three genetically distinct HRV groups, designated groups A, B, and C, within the genus Enterovirus and the family Picornaviridae. HRVs are positive-sense, single-stranded-RNA (ssRNA) viruses of approximately 7,200 bp. HRVs, which are the cause of more than one-half of cold like illnesses, are commonly associated with upper respiratory tract infection, otitis media, and sinusitis. PCR testing for respiratory virus detection has led to the recognition of HRV as a lower respiratory tract pathogen as well, especially in patients with asthma, infants, elderly patients, and immunocompromised individuals. At this time there are no approved antiviral therapies, and treatment is primarily supportive. Source: Regenstrief LOINC, PMCID: PMC3553670

Fully-Specified Name

Component

Rhinovirus RNA

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

Rhinovirus RNA Resp Ql NAA+probe

Display Name

Rhinovirus RNA NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

Rhinovirus, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.66

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL360-9

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• DNA NUCLEIC ACID PROBE
• DNA probe
• HRV
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• Rhino virus
• RHV
• Ribonucleic acid
• RS
• Screen
• SDA
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

94533-7 SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by NAA with probe detection

Term Description

Qualitative detection of nucleic acids within the nucleoprotein (N) gene of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection. Various assays have been developed that contain primer-probe sets targeting N gene. [https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance]
Source: Regenstrief LOINC

Part Descriptions

LP417599-0   SARS coronavirus 2 N gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance] Source: Regenstrief LOINC

Reference Information

Fully-Specified Name

Component

SARS coronavirus 2 N gene

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

SARS-CoV-2 N gene Resp Ql NAA+probe

Display Name

SARS-CoV-2 (COVID-19) N gene NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

SARS-CoV-2 (COVID-19) N gene, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.68

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL2009-0

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 2019 Novel Coronavirus
• 2019-nCoV
• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• Corona virus
• COVID19
• COVID-19
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• II
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• RS
• SARS Coronavirus 1
• SARS-CoV
• SARS-CoV-1
• SARS-CoV-2
• SARS-CoV-2 N gene
• Screen
• SDA
• Severe Acute Respiratory Syndrome
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Viral Pneumonias
• Wuhan coronavirus

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

94559-2 SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection

Term Description

Qualitative detection of nucleic acids within the Open Reading Frame 1ab (ORF1ab) region of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection.
Source: Regenstrief LOINC

Reference Information

Fully-Specified Name

Component

SARS coronavirus 2 ORF1ab region

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

SARS-CoV-2 ORF1ab Resp Ql NAA+probe

Display Name

SARS-CoV-2 (COVID-19) ORF1ab region NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

SARS-CoV-2 (COVID-19) ORF1ab region, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.68

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Observation

Example Answer List LL2021-5

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 2019 Novel Coronavirus
• 2019-nCoV
• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• Corona virus
• COVID19
• COVID-19
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• II
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• RS
• SARS Coronavirus 1
• SARS-CoV
• SARS-CoV-1
• SARS-CoV-2
• SARS-CoV-2 ORF1ab
• Screen
• SDA
• Severe Acute Respiratory Syndrome
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Viral Pneumonias
• Wuhan coronavirus

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

This material includes content from the US Edition to SNOMED CT, which is developed and maintained by the U.S. National Library of Medicine and is available to authorized UMLS Metathesaurus Licensees from the UTS Downloads site at https://uts.nlm.nih.gov.

Use of SNOMED CT content is subject to the terms and conditions set forth in the SNOMED CT Affiliate License Agreement. It is the responsibility of those implementing this product to ensure they are appropriately licensed and for more information on the license, including how to register as an Affiliate Licensee, please refer to http://www.snomed.org/snomed-ct/get-snomed-ct or info@snomed.org<mailto:info@snomed.org>. This may incur a fee in SNOMED International non-Member countries.

94640-0 SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory system specimen by NAA with probe detection

Term Description

Qualitative detection of nucleic acids within the spike (S) gene of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection.
Source: Regenstrief LOINC

Part Descriptions

LP418046-1   SARS coronavirus 2 S gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance] Source: Regenstrief LOINC

Reference Information

Fully-Specified Name

Component

SARS coronavirus 2 S gene

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

SARS-CoV-2 S gene Resp Ql NAA+probe

Display Name

SARS-CoV-2 (COVID-19) S gene NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

SARS-CoV-2 (COVID-19) S gene, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.68

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

Example Answer List LL2021-5

Member of these Panels

Member of these Groups Get Info

Language Variants Get Info

Related Names

• 2019 Novel Coronavirus
• 2019-nCoV
• 3 Self-Sustaining Sequence Replication
• 3SR SR
• Amplif
• Amplification
• Amplified
• Breathing
• Corona virus
• COVID19
• COVID-19
• DNA NUCLEIC ACID PROBE
• DNA probe
• ID
• II
• Infectious Disease
• InfectiousDisease
• LAT
• LCR
• Ligase chain reaction
• Ligation-activated transcription
• Lungs
• Microbiology
• NAA+probe
• NAAT
• NASBA
• Nucleic acid sequence based analysis
• Ordinal
• PCR
• Point in time
• Polymerase chain reaction
• PR
• Probe amp
• Probe with ampification
• Probe with target amplification
• QBR
• QL
• Qual
• Qualitative
• Random
• RS
• S prime
• SARS Coronavirus 1
• SARS-CoV
• SARS-CoV-1
• SARS-CoV-2
• SARS-CoV-2 S gene
• SARS-Related Coronavirus
• Screen
• SDA
• Severe Acute Respiratory Syndrome
• Spec
• Strand Displacement Amplification
• TMA
• Transcription mediated amplification
• Viral Pneumonias
• Wuhan coronavirus

Third Party Copyright

This material includes SNOMED Clinical Terms® (SNOMED CT®) which is used by permission of the International Health Terminology Standards Development Organisation (IHTSDO) under license. All rights reserved. SNOMED CT® was originally created by The College of American Pathologists. "SNOMED" and "SNOMED CT" are registered trademarks of the IHTSDO.

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94534-5 SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory system specimen by NAA with probe detection

Term Description

Qualitative detection of nucleic acids within the RdRp gene of SARS coronavirus 2 (SARS-CoV-2) in respiratory specimens by nucleic acid amplification with probe-based detection. Various assays have been developed that contain primer-probe sets targeting RdRp gene. [https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance]
Source: Regenstrief LOINC

Part Descriptions

LP417598-2   SARS coronavirus 2 RdRp gene
The Severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2), first known as 2019 Novel Coronavirus (2019-nCoV), was first identified as the cause of a respiratory illness outbreak, later defined as Coronavirus Disease 2019 (COVID-19), in Wuhan, China. The full genome of the SARS-CoV-2 that causes COVID-19 was first posted by Chinese health authorities in GenBank, the NIH genetic sequence database, and in the Global Initiative on Sharing All Influenza Data (GISAI) portal. This facilitated detection of the virus globally with subsequent sequences being nearly identical, suggesting a single, recent emergence from a virus related to bat coronaviruses and the SARS coronavirus. Real time Reverse Transcription-Polymerase Chain Reaction (rRT-PCR) tests targeting regions within genes, including RdRp, S, N, M, and E genes, specific to SARS-CoV-2 have been developed by the Centers for Disease Control and Prevention (CDC), the World Health Organization (WHO) and others for the diagnosis of COVID-19. Some assays only detect SARS-CoV-2 and other assays detect other strains (e.g. SARS-CoV) that are genetically similar.[CDC: coronavirus/2019-ncov][https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/laboratory-guidance] Source: Regenstrief LOINC

Reference Information

Fully-Specified Name

Component

SARS coronavirus 2 RdRp gene

Property

PrThr

Time

Pt

System

Respiratory System Specimen

Scale

Ord

Method

Probe.amp.tar

Additional Names

Short Name

SARS-CoV-2 RdRp Resp Ql NAA+probe

Display Name

SARS-CoV-2 (COVID-19) RdRp gene NAA+probe Ql (Respiratory system specimen)

Consumer Name Alpha Get Info

SARS-CoV-2 (COVID-19) RdRp gene, Respiratory system specimen

Basic Attributes

Class

MICRO

Type

Laboratory

First Released

Version 2.68

Last Updated

Version 2.75

Change Reason

Release 2.75: SYSTEM: There are 2 similar system's in LOINC: 1- Respiratory system 2- Respiratory specimen Due to an applied logic, the display in the System axis for 1 is Respiratory (adjective) without specification of sample, specimen, or other specific noun, while 2 is displayed fully as Respiratory specimen. Therefore for now we replaced 1 with Respiratory system specimen, which will affect 83 term. The result is replacing "Respiratory" with "Respiratory system specimen". This is the short approach. The bigger project is to potentially merge data that has either 1 or 2 together. This is a project to pass by the laboratory committee and will involve about 1500 concepts.;

Order vs. Observation

Both

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